Items by Sheppard, Samuel

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Pascoe, B., Lappin-Scott, H., Asakura, H. and Sheppard, S., 2014. Does Biofilm Formation Aid Colonization and Infection in Campylobacter? In: Sheppard, S. and Meric, G., eds. Campylobacter Ecology and Evolution. Norwich, UK: Caister Academic Press, pp. 177-188.


Woodcock, D. J., Krusche, P., Strachan, N. J. C., Forbes, K. J., Cohan, F. M., Méric, G. and Sheppard, S. K., 2017. Genomic plasticity and rapid host switching can promote the evolution of generalism:A case study in the zoonotic pathogen Campylobacter. Scientific Reports, 7 (1), 9650.

Petrovska, L., Tang, Y., Jansen van Rensburg, M. J., Cawthraw, S., Nunez, J., Sheppard, S. K., Ellis, R. J., Whatmore, A. M., Crawshaw, T. R. and Irvine, R. M., 2017. Genome reduction for niche association in Campylobacter hepaticus, a cause of spotty liver disease in poultry. Frontiers in Cellular and Infection Microbiology, 7 (AUG), 354.

Post, V., Harris, L. G., Morgenstern, M., Mageiros, L., Hitchings, M. D., Méric, G., Pascoe, B., Sheppard, S. K., Richards, R. G. and Moriarty, T. F., 2017. A comparative genomics study of Staphylococcus epidermidis from orthopedic device-related infections correlated with patient outcome. Journal of Clinical Microbiology

Pascoe, B., Méric, G., Yahara, K., Wimalarathna, H., Murray, S., Hitchings, M. D., Sproston, E. L., Carrillo, C. D., Taboada, E. N., Cooper, K. K., Huynh, S., Cody, A. J., Jolley, K. A., Maiden, M. C. J., McCarthy, N. D., Didelot, X., Parker, C. T. and Sheppard, S. K., 2017. Local genes for local bacteria:evidence of allopatry in the genomes of transatlantic Campylobacter populations. Molecular Ecology

Murray, S., Pascoe, B., Méric, G., Mageiros, L., Yahara, K., Hitchings, M. D., Friedmann, Y., Wilkinson, T. S., Gormley, F. J., Mack, D., Bray, J. E., Lamble, S., Bowden, R., Jolley, K. A., Maiden, M. C. J., Wendlandt, S., Schwarz, S., Corander, J., Ross Fitzgerald, J. and Sheppard, S. K., 2017. Recombination-mediated host-adaptation by avian Staphylococcus aureus. Genome Biology and Evolution, 9 (4), pp. 830-842.

Thépault, A., Méric, G., Rivoal, K., Pascoe, B., Mageiros, L., Touzain, F., Rose, V., Béven, V., Chemaly, M. and Sheppard, S. K., 2017. Genome-wide identification of host-segregating epidemiological markers for source attribution in Campylobacter jejuni. Applied and Environmental Microbiology, 83 (7), e03085-16.

Post, V., Harris, L. G., Morgenstern, M., Geoff Richards, R., Sheppard, S. K. and Fintan Moriarty, T., 2017. Characterization of nasal methicillin-resistant Staphylococcus aureus isolated from international human and veterinary surgeons. Journal of Medical Microbiology, 66 (3), 000415.

Esson, D., Gupta, S., Bailey, D., Wigley, P., Wedley, A., Mather, A. E., Méric, G., Mastroeni, P., Sheppard, S. K., Thomson, N. R., Parkhill, J., Maskell, D. J., Christie, G. and Grant, A. J., 2017. Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape. Microbial Pathogenesis, 104, pp. 202-211.

Thorell, K., Yahara, K., Berthenet, E., Lawson, D. J., Mikhail, J., Kato, I., Mendez, A., Rizzato, C., Bravo, M. M., Suzuki, R., Yamaoka, Y., Torres, J., Sheppard, S. K. and Falush, D., 2017. Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas. Plos Genetics, 13 (2), e1006546.

Vale, F. F., Nunes, A., Oleastro, M., Gomes, J. P., Sampaio, D. A., Rocha, R., Vítor, J. M. B., Engstrand, L., Pascoe, B., Berthenet, E., Sheppard, S. K., Hitchings, M. D., Mégraud, F., Vadivelu, J. and Lehours, P., 2017. Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins. Scientific Reports, 7, p. 42471.

Bayliss, S. C., Verner-Jeffries, D. W., Bartie, K. L., Aanensen, D. M., Sheppard, S. K., Adams, A. and Feil, E. J., 2017. The promise of whole genome pathogen sequencing for the molecular epidemiology of emerging aquaculture pathogens. Frontiers in Microbiology, 8, 237708.

Yahara, K., Méric, G., Taylor, A. J., de Vries, S. P. W., Murray, S., Pascoe, B., Mageiros, L., Torralbo, A., Vidal, A., Ridley, A., Komukai, S., Wimalarathna, H., Cody, A. J., Colles, F. M., McCarthy, N., Harris, D., Bray, J. E., Jolley, K. A., Maiden, M. C. J., Bentley, S. D., Parkhill, J., Bayliss, C. D., Grant, A., Maskell, D., Didelot, X., Kelly, D. J. and Sheppard, S. K., 2017. Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork. Environmental Microbiology, 19 (1), pp. 361-380.

Yan, X., Li, Z., Chlebowicz, M. A., Tao, X., Ni, M., Hu, Y., Li, Z., Grundmann, H., Murray, S., Pascoe, B., Sheppard, S. K., Bo, X., Dijl, J. M. v., Du, P., Zhang, M., You, Y., Yu, X., Meng, F., Wang, S. and Zhang, J., 2016. Genetic features of livestock-associated Staphylococcus aureus ST9 isolates from Chinese pigs that carry the lsa(E) gene for quinupristin/dalfopristin resistance. International Journal of Medical Microbiology, 306 (8), 722–729.

Monteil, C. L., Yahara, K., Studholme, D. J., Mageiros, L., Méric, G., Swingle, B., Morris, C. E., Vinatzer, B. A. and Sheppard, S. K., 2016. Population-genomic insights into emergence, crop adaptation and dissemination of Pseudomonas syringae pathogens. Microbial Genomics, 2 (10), e000089.

Culebro, A., Revez, J., Pascoe, B., Friedmann, Y., Hitchings, M. D., Stupak, J., Sheppard, S. K., Li, J. and Rossi, M., 2016. Large sequence diversity within biosynthesis locus and common biochemical features of Campylobacter coli lipooligosaccharides. Journal of Bacteriology, 198 (20), pp. 2829-2840.

McNally, A., Oren, Y., Kelly, D., Pascoe, B., Dunn, S., Sreecharan, T., Vehkala, M., Välimäki, N., Prentice, M. B., Ashour, A., Avram, O., Pupko, T., Dobrindt, U., Literak, I., Guenther, S., Schaufler, K., Wieler, L. H., Zhiyong, Z., Sheppard, S. K., McInerney, J. O. and Corander, J., 2016. Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations. Plos Genetics, 12 (9), e1006280.

Berthenet, E., Sheppard, S. and Vale, F. F., 2016. Recent “omics” advances in Helicobacter pylori. Helicobacter, 21 (S1), pp. 14-18.

Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. and Honkela, A., 2016. Bayesian identification of bacterial strains from sequencing data. Microbial Genomics, 2 (08).

Gilbert, M. J., Miller, W. G., Yee, E., Zomer, A. L., van der Graaf-van Bloois, L., Fitzgerald, C., Forbes, K. J., Méric, G., Sheppard, S. K., Wagenaar, J. A. and Duim, B., 2016. Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages. Genome Biology and Evolution, 8 (6), pp. 2006-2019.

Méric, G., Hitchings, M. D., Pascoe, B. and Sheppard, S. K., 2016. From Escherich to the Escherichia coli genome. The Lancet Infectious Diseases, 16 (6), pp. 634-636.

Harris, L. G., Murray, S., Pascoe, B., Bray, J. E., Meric, G., Mageiros, L., Wilkinson, T. S., Jeeves, R., Rohde, H., Schwarz, S., de Lencastre, H., Miragaia, M., Rolo, J., Bowden, R., Jolley, K. A., Maiden, M. C. J., Mack, D. and Sheppard, S. K., 2016. Correction:Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples. PLoS ONE, 11 (4), e0154510.

Harris, L. G., Murray, S., Pascoe, B., Bray, J., Meric, G., Magerios, L., Wilkinson, T. S., Jeeves, R., Rohde, H., Schwarz, S., de Lencastre, H., Miragaia, M., Rolo, J., Bowden, R., Jolley, K. A., Maiden, M. C. J., Mack, D. and Sheppard, S. K., 2016. Biofilm morphotypes and population structure among Staphylococcus epidermidis from commensal and clinical samples. PLoS ONE, 11 (3), e0151240.

Dearlove, B. L., Cody, A. J., Pascoe, B., Meric, G., Wilson, D. J. and Sheppard, S. K., 2016. Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections. ISME Journal, 10 (3), pp. 721-729.

Yahara, K., Didelot, X., Jolley, K. A., Kobayashi, I., Maiden, M. C. J., Sheppard, S. and Falush, D., 2016. The landscape of realized homologous recombination in pathogenic bBacteria. Molecular Biology and Evolution, 33 (2), pp. 456-471.

Jackson, E. E., Ogrodzki, P., Pascoe, B., Sheppard, S. K. and Forsythe, S. J., 2016. Draft genome sequence of an Enterobacter species associated with illnesses and powdered infant formula. Genome announcements, 4 (1), e01479-15.

Pascoe, B., Méric, G., Murray, S., Yahara, K., Mageiros, L., Bowen, R., Jones, N. H., Jeeves, R. E., Lappin-Scott, H. M., Asakura, H. and Sheppard, S. K., 2015. Enhanced biofilm formation and multi-host transmission evolve from divergent genetic backgrounds in Campylobacter jejuni. Environmental Microbiology, 17 (11), pp. 4779-4789.

Richards, R. L., Haigh, R. D., Pascoe, B., Sheppard, S. K., Price, F., Jenkins, D., Rajakumar, K. and Morrissey, J. A., 2015. Persistent Staphylococcus aureus isolates from two independent cases of bacteremia display increased bacterial fitness and novel immune evasion phenotypes. Infection and immunity, 83 (8), pp. 3311-3324.

Morley, L., McNally, A., Paszkiewicz, K., Corander, J., Méric, G., Sheppard, S. K., Blom, J. and Manning, G., 2015. Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex. Applied and Environmental Microbiology, 81 (11), pp. 3641-3647.

Méric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. and Sheppard, S. K., 2015. Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis. Genome Biology and Evolution, 7 (5), pp. 1313-1328.

Baily, J. L., Méric, G., Bayliss, S., Foster, G., Moss, S. E., Watson, E., Pascoe, B., Mikhail, J., Pizzi, R., Goldstone, R. J., Smith, D. G. E., Willoughby, K., Hall, A. J., Sheppard, S. K. and Dagleish, M. P., 2015. Evidence of land-sea transfer of the zoonotic pathogen Campylobacter to a wildlife marine sentinel species. Molecular Ecology, 24 (1), pp. 208-221.

Sheppard, S. K., Cheng, L., Meric, G., de Haan, C. P. A., Llarena, A.-K., Marttinen, P., Vidal, A., Ridley, A., Clifton-Hadley, F., Connor, T. R., Strachan, N. J. C., Forbes, K., Colles, F. M., Jolley, K. A., Bentley, S. D., Maiden, M. C. J., Hanninen, M.-L., Parkhill, J., Hanage, W. P. and Corander, J., 2014. Cryptic ecology among host generalist Campylobacter jejuni in domestic animals. Molecular Ecology, 23 (10), pp. 2442-2451.

Sheppard, S. K., Didelot, X., Meric, G., Torralbo, A., Jolley, K. A., Kelly, D. J., Bentley, S. D., Maiden, M. C. J., Parkhill, J. and Falush, D., 2013. Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter. Proceedings of the National Academy of Sciences of the United States of America, 110 (29), pp. 11923-11927.

Sheppard, S. K., Didelot, X., Jolley, K. A., Darling, A. E., Pascoe, B., Meric, G., Kelly, D. J., Cody, A., Colles, F. M., Strachan, N. J. C., Ogden, I. D., Forbes, K., French, N. P., Carter, P., Miller, W. G., McCarthy, N. D., Owen, R., Litrup, E., Egholm, M., Affourtit, J. P., Bentley, S. D., Parkhill, J., Maiden, M. C. J. and Falush, D., 2013. Progressive genome-wide introgression in agricultural Campylobacter coli. Molecular Ecology, 22 (4), pp. 1051-1064.

This list was generated on Wed Jun 20 08:54:32 2018 IST.